As with any parameter or switch, you can assign which MIDI CC# will correspond to that function. Have you checked that a CC# is not assigned to both functions simultaneously?
Best recommendation I can give you is to connect your TimeFactor to H9 Control (either directly to a computer via USB or to a tablet using the USB camera adapter). In the Pedal tab, MIDI settings, Assign MIDI CC Messages, you can see what is currently assigned and make changes. This way you can ensure no two functions are getting confused.