The change of the factory data only happens when you switch the pedal from Insert Mode to Dual Mode.

You may use Dual Mode with a stereo input and have both presets on Path 1. You may then switch your routing to use dual paths if you like.

You only need to use Insert Mode if you’d like to use external pedals in the insert path. Otherwise, I would stick to Dual Mode and you don’t have to worry about this.